FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002300615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6590810
Sequences flagged as poor quality0
Sequence length126
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT178280.27049785989885916No Hit
CTCTGGTCCTGGAACTACTCCCAGCCCTGTTCCCACCACCAGCACAACCT173290.2629267115878018No Hit
GGAACTACTCCCAGCCCTGTTCCCACCACCAGCACAACCTCTGCTCCTAC114130.17316536207234012No Hit
GCTCACTCCCCTTCCACCCTCAGCTCCACCCTCAGCAGATGATAATATCA82970.12588740989347288No Hit
CTCTGGTCCTGGAAGTACTCCCAGCCCTGTTCCCACCACCAGCACAACCT80010.1213963078893186No Hit
CCCAGCCCTGTTCCCACCACCAGCACAACCTCTGCTCCTACAACCAGCAC69130.10488847349567049No Hit
GTTCCCACCACCAGCACAACCTCTGCTCCTACAACCAGCACAACCTCTGG68280.10359879893366672No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)