FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002300620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300620
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6881824
Sequences flagged as poor quality0
Sequence length126
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT215560.3132309108747913No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA135720.19721515691188848No Hit
CTTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGG107210.15578718665284086No Hit
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG99830.14506328554755252No Hit
TTGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGGC89140.12952961307932315No Hit
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATGCC76490.11114785847472995TruSeq Adapter, Index 7 (100% over 50bp)
TGAGATTATCATCCGCTGAGGGTGGAAGCGGCCCCCGCAGACGCTCGGCA76430.11106067228688209No Hit
GTGGAGCTGAGGGTGGAAGGGGAGTGAGCTGACGCTCGGAAGGTGTCTTG71400.10375156353896874No Hit
GGAAGGGGAGTGAGCTGACGCTCGGAAGGTGTCTTGAGATTATCATCCGC69440.10090348140260488No Hit
GTGGAAGCGGCCCCCGCAGACGCTCGGCAGGTGTCTTGATATTATCATCT69030.10030770911897775No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)