FastQCFastQC Report
Fri 31 May 2024
EGAF00002300621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6881824
Total Bases867.1 Mbp
Sequences flagged as poor quality0
Sequence length126
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAAGACACCTTCCGAGCGTCAGCTCACTCCCCTTCCACCCTCAGCTCC119330.1733987965981112No Hit
CCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCT83560.12142129760947097No Hit
TCCACCCTCAGCGGATGATAATCTCAAGACACCTTCCGAGCGTCAGCTCA73810.10725354208419163No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)