FastQCFastQC Report
Sun 11 Sep 2022
EGAF00002300694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2821273
Sequences flagged as poor quality0
Sequence length126
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACG81910.290329932622614No Hit
TCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGAT62650.22206287728979082No Hit
GTCCGACTATGCGAGTGTGGTGTCATAGATGACCAAGCTTGGCAGGTTCT61420.21770314322647968No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA60790.21547010870624717No Hit
GCCAGCATTTGGGTAGTATTCTGGGGTCCGACTATGCGAGTGTGGTGTCA59560.21111037464293603No Hit
GTCCATTACCATGGTAGCACTCCTGCACCCCAGGCCTTTGCTCAGTCGGT56990.20200101160008266No Hit
GGACACTGCTGAAGATACTGAGCAAAGGCAATCAACACCAAGGCTTTGAA44380.15730487620304734No Hit
GTCATAGATGACCAAGCTTGGCAGGTTCTTCCTGTGACAGTGGTGGAGTA42870.1519526823529662No Hit
GTTCGGAAGGAGCCTCTAGGCTTGGAACCGGGGTAACAGTCGGAGGCGCG41820.14823095815257864No Hit
CAGCATTTGGGTAGTATTCTGGGGTCCGACTATGCGAGTGTGGTGTCATA40630.1440130040588061No Hit
GGGGTAACAGTCGGAGGCGCGACGGCAGTCCCTTCTGCGTCTGAGCATTG37900.13433652113779843No Hit
GTCCACGTCAAGAGCCAAGCCAAGGTACTGTTCCTCCAATGAGTAAACAG37180.13178448168610413No Hit
GGTAACAGTCGGAGGCGCGACGGCAGTCCCTTCTGCGTCTGAGCATTGCG31730.11246696083647346No Hit
GGTGCTTGTTCGGAAGGAGCCTCTAGGCTTGGAACCGGGGTAACAGTCGG31600.11200617593547312No Hit
CCACGTCAAGAGAAAAGCCAACATGTTTTTCCTCCAATGCATAAAAGGAA31230.1106947112172413No Hit
CCCAGGCCTTTGCTCAGTCGGTGCTTGTTCGGAAGGAGCCTCTAGGCTTG31000.10987947639239448No Hit
CCTCGTATAACAATAAGGAGCTGCCACAGCATCTGGATTCCTGCAGTAGT30590.10842623170462412No Hit
TCAGTCGGTGCTTGTTCGGAAGGAGCCTCTAGGCTTGGAACCGGGGTAAC30400.10775277684931589No Hit
CGGGGTAACAGTCGGAGGCGCGACGGCAGTCCCTTCTGCGTCTGAGCATT29680.10520073739762156No Hit
TCGTATAACAATAAGGAGCTGCCACAGCATCTGGATTCCTGCAGTAGTTC28640.10151445818961866No Hit
GGGTAGTATTCTGGGGTCCGACTATGCGAGTGTGGTGTCATAGATGACCA28520.10108911828100293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)