FastQCFastQC Report
Sun 11 Sep 2022
EGAF00002300695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002300695
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2821273
Sequences flagged as poor quality0
Sequence length126
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGAATACTACCCAAATGCTGGCTTGATCATGAACTACTGCAGGAATCCA46520.16489010457336103No Hit
CGGTGTCAGGTGGGAGTACTGCAACCTGACGCAATGCTCAGACGCAGAAG36550.12955144716587158No Hit
CCGGTGTCAGGTGGGAGTACTGCAACCTGACGCAATGCTCAGACGCAGAA36550.12955144716587158No Hit
CATGAACTACTGCAGGAATCCAGATGCTGTGGCAGCTCCTTATTGTTATA34800.12334857349855899No Hit
TGCAACCTGACGCAATGCTCAGACGCAGAAGGGACTGCCGTCGCGCCTCC32010.11345942062324349No Hit
AGGAGTGCTACCATGGTAATGGACAGAGTTATCGAGGCACATACTCCACC31790.11267963079078132No Hit
GGGACTGCCGTCGCGCCTCCGACTGTTACCCCGGTTCCAAGCCTAGAGGC31760.1125732958136274No Hit
AGATGCTGTGGCAGCTCCTTATTGTTATACGAGGGATCCCGGTGTCAGGT31550.11182895097354988No Hit
CGGTTCCAAGCCTAGAGGCTCCTTCCGAACAAGCACCGACTGAGCAAAGG30560.10831989672747018No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)