FastQCFastQC Report
Fri 10 May 2024
EGAF00002311847

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002311847
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62957664
Total Bases503.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCTTCG2267809436.021180836696864No Hit
CGTGCAGA1568745324.917463583146922No Hit
GTATGCTC1335752321.216675065961788No Hit
AACAAGAT1029412516.35086873617166No Hit
CGTGCAGC1418670.2253371408443617No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)