FastQCFastQC Report
Fri 10 May 2024
EGAF00002311850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002311850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63000391
Total Bases504 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCTTCG2256155735.81177297772644No Hit
CGTGCAGA1564198824.828398287242376No Hit
GTATGCTC1347482721.388481541328847No Hit
AACAAGAT1038078616.47733583113794No Hit
CGTGCAGC1584570.2515174866136942No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)