FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002311859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002311859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47753476
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCGC1335100127.95817628019372No Hit
AGCTGGAT1317609127.591899278703817No Hit
CATGAACA1029294421.554334599642548No Hit
GTGACTTG1006895121.085273457370935No Hit
TCCCTCGC1143700.23950088994568688No Hit
GTGCCTTG953930.19976137443900419No Hit
CATGCACA565640.11845001607841071No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)