FastQCFastQC Report
Wed 8 May 2024
EGAF00002311862

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002311862
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47635800
Total Bases381 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCGC1328452427.88768951083009No Hit
AGCTGGAT1319573627.70130028256059No Hit
CATGAACA1027164821.56287498058183No Hit
GTGACTTG1000710921.007538447974003No Hit
TCCCTCGC1221470.2564184919745234No Hit
GTGCCTTG983570.20647706136981012No Hit
CATGCACA616270.12937118721633728No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)