FastQCFastQC Report
Wed 8 May 2024
EGAF00002311865

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002311865
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47950769
Total Bases383.6 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTCGC1337355327.89017419094989No Hit
AGCTGGAT1326205727.657652372582387No Hit
CATGAACA1033831921.560277792416635No Hit
GTGACTTG1014796421.163297714787433No Hit
TCCCTCGC1135650.23683666053405736No Hit
GTGCCTTG883990.1843536649015994No Hit
CATGCACA558760.11652784963678059No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)