FastQCFastQC Report
Thu 9 May 2024
EGAF00002311871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002311871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38509058
Total Bases308 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCCCT1121622029.12618636373811No Hit
AATCAATG922121023.945561067736325No Hit
CCGATTAA881483322.89028467016773No Hit
GGATGGGC793767720.612493299628362No Hit
TTCGCCCG1213350.3150817140216725No Hit
GGCTGGGC726520.18866210645817408No Hit
CCGATTTA655660.17026124087480926No Hit
GGGTGGGC621850.16148148832931722No Hit
GGTTGGGC577590.14998808851673287No Hit
AATCTATG474910.12332423192486297No Hit
GGATGGGG388610.1009139200444737No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)