FastQCFastQC Report
Mon 12 Sep 2022
EGAF00002311874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002311874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39077223
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCCCT1138405029.132187822046617No Hit
AATCAATG937506223.99111625716085No Hit
CCGATTAA896245322.935235188027566No Hit
GGATGGGC803675220.566333487924666No Hit
TTCGCCCG1232500.3154011225413843No Hit
GGCTGGGC739510.18924323256030756No Hit
GGGTGGGC640060.16379362474145107No Hit
CCGATTTA577350.14774591326512634No Hit
GGTTGGGC566110.144869557388968No Hit
AATCTATG405640.10380471508940131No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)