FastQCFastQC Report
Fri 10 May 2024
EGAF00002311877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002311877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40963208
Total Bases327.7 Mbp
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGCCCT1201139329.32239340239173No Hit
AATCAATG988319024.126992202368523No Hit
CCGATTAA943046223.021785793729826No Hit
GGATGGGC846965320.676244399608546No Hit
TTCGCCCG1024850.25018792473480106No Hit
GGCTGGGC749660.18300812768374977No Hit
CCGATTTA549660.1341838266182668No Hit
GGGTGGGC519710.12687238753371072No Hit
GGTTGGGC449150.10964717411780835No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.12.1)