@HD VN:1.4 SO:coordinate @RG ID:19500_2#13 DT:2016-04-18T00:00:00+0100 PU:160418_HS21_19500_B_H3LKTADXY_2#13 LB:16214776 PG:BamIndexDecoder SM:3776STDY6384026 CN:SC PL:ILLUMINA DS:A systems biology approach to understand immunity and pathogenesis of malaria in children exposed to endemic Plasmodium falciparum transmission: From long-term studies of children in Kenya, we know that some children have numerous malaria episodes through to older age, while other children become immune more rapidly. Our hypothesis is that these children with frequent malaria episodes are caught in a vicious circle, whereby malaria episodes lead to impaired immunity to malaria, which in turn leads to further episodes of malaria. We will therefore investigate immune responses in children with different life histories of malaria episodes. We will also include a group of children living in similar environmental conditions but who are completely unexposed to malaria. Aims: Using RNAseq we will characterise the transcriptome of a group of children with frequent and febrile malaria or infrequent/asymptomatic. These data will be combined with cytokine profiling data (NIMR) and used to build predictive models (Exeter). The predictions will be validated against a similar second group. A single snap shot of immune responses may represent only the endpoint of many immune processes and may not reflect those that are causally related to differences in malaria outcome. Therefore, we will collect and store samples from a larger group of children who will then be followed up for over 3-4 years. This extended follow up will allow us to identify the same groups as described above, and then examine samples taken before the development of those outcomes. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ @PG ID:SCS VN:2.2.68 PN:HiSeq Control Software DS:Controlling software on instrument @PG ID:basecalling PP:SCS VN:1.18.66.3 PN:RTA DS:Basecalling Package @PG ID:Illumina2bam PP:basecalling VN:V1.19 CL:uk.ac.sanger.npg.illumina.Illumina2bam INTENSITY_DIR=/nfs/sf38/ILorHSany_sf38/analysis/160418_HS21_19500_B_H3LKTADXY/Data/Intensities BASECALLS_DIR=/nfs/sf38/ILorHSany_sf38/analysis/160418_HS21_19500_B_H3LKTADXY/Data/Intensities/BaseCalls LANE=2 OUTPUT=/dev/stdout READ_GROUP_ID=19500_2 SAMPLE_ALIAS=3776STDY6384014,3776STDY6384015,3776STDY6384016,3776STDY6384017,3776STDY6384018,3776STDY6384019,3776STDY6384020,3776STDY6384021,3776STDY6384022,3776STDY6384023,3776STDY6384024,3776STDY6384025,3776STDY6384026,3776STDY6384027,3776STDY6384028,3776STDY6384029,3776STDY6384030,3776STDY6384031,3776STDY6384032,3776STDY6384033,3776STDY6384034,3776STDY6384035,3776STDY6384036,3776STDY6384037,3776STDY6384038,3776STDY6384039 STUDY_NAME=A systems biology approach to understand immunity and pathogenesis of malaria in children exposed to endemic Plasmodium falciparum transmission: From long-term studies of children in Kenya, we know that some children have numerous malaria episodes through to older age, while other children become immune more rapidly. Our hypothesis is that these children with frequent malaria episodes are caught in a vicious circle, whereby malaria episodes lead to impaired immunity to malaria, which in turn leads to further episodes of malaria. We will therefore investigate immune responses in children with different life histories of malaria episodes. We will also include a group of children living in similar environmental conditions but who are completely unexposed to malaria. Aims: Using RNAseq we will characterise the transcriptome of a group of children with frequent and febrile malaria or infrequent/asymptomatic. These data will be combined with cytokine profiling data (NIMR) and used to build predictive models (Exeter). The predictions will be validated against a similar second group. A single snap shot of immune responses may represent only the endpoint of many immune processes and may not reflect those that are causally related to differences in malaria outcome. Therefore, we will collect and store samples from a larger group of children who will then be followed up for over 3-4 years. This extended follow up will allow us to identify the same groups as described above, and then examine samples taken before the development of those outcomes. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ PLATFORM_UNIT=160418_HS21_19500_B_H3LKTADXY_2 COMPRESSION_LEVEL=0 GENERATE_SECONDARY_BASE_CALLS=false PF_FILTER=true LIBRARY_NAME=unknown SEQUENCING_CENTER=SC PLATFORM=ILLUMINA BARCODE_SEQUENCE_TAG_NAME=BC BARCODE_QUALITY_TAG_NAME=QT ADD_CLUSTER_INDEX_TAG=false VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false PN:Illumina2bam DS:Convert Illumina BCL to BAM or SAM file @PG ID:bamadapterfind PP:Illumina2bam VN:2.0.37 CL:bamadapterfind level=0 PN:bamadapterfind @PG ID:BamIndexDecoder PP:bamadapterfind VN:V1.19 CL:uk.ac.sanger.npg.picard.BamIndexDecoder INPUT=/dev/stdin OUTPUT=/dev/stdout BARCODE_FILE=/nfs/sf38/ILorHSany_sf38/analysis/160418_HS21_19500_B_H3LKTADXY/Data/Intensities/BAM_basecalls_20160419-205116/metadata_cache_19500/lane_2.taglist METRICS_FILE=/nfs/sf38/ILorHSany_sf38/analysis/160418_HS21_19500_B_H3LKTADXY/Data/Intensities/BAM_basecalls_20160419-205116/19500_2.bam.tag_decode.metrics VALIDATION_STRINGENCY=SILENT CREATE_MD5_FILE=false BARCODE_TAG_NAME=BC BARCODE_QUALITY_TAG_NAME=QT MAX_MISMATCHES=1 MIN_MISMATCH_DELTA=1 MAX_NO_CALLS=2 CONVERT_LOW_QUALITY_TO_NO_CALL=false CHANGE_READ_NAME=false MAX_LOW_QUALITY_TO_CONVERT=15 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false PN:BamIndexDecoder DS:A command-line tool to decode multiplexed bam file @PG ID:spf PP:BamIndexDecoder VN:v10.26-dirty CL:/software/solexa/pkg/pb_calibration/10.26/bin/spatial_filter -c -F pb_align_19500_2.bam.filter -t /nfs/sf38/ILorHSany_sf38/analysis/160418_HS21_19500_B_H3LKTADXY/Data/Intensities/BAM_basecalls_20160419-205116/no_cal/archive/qc/tileviz/19500_2 --region_size 200 --region_mismatch_threshold 0.0160 --region_insertion_threshold 0.0160 --region_deletion_threshold 0.0160 pb_align_19500_2.bam ; /software/solexa/pkg/pb_calibration/10.26/bin/spatial_filter -a -f -u -F pb_align_19500_2.bam.filter - PN:spatial_filter DS:A program to apply a spatial filter @PG ID:bwa PP:spf VN:0.5.10-tpx PN:bwa @PG ID:BamMerger PP:bwa VN:V1.19 CL:uk.ac.sanger.npg.picard.BamMerger ALIGNED_BAM=pb_align_19500_2.bam INPUT=/dev/stdin OUTPUT=19500_2.bam KEEP_EXTRA_UNMAPPED_READS=true REPLACE_ALIGNED_BASE_QUALITY=true VALIDATION_STRINGENCY=SILENT CREATE_MD5_FILE=true ALIGNMENT_PROGRAM_ID=bwa KEEP_ALL_PG=false VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false PN:BamMerger DS:A command-line tool to merge BAM/SAM alignment info in the first input file with the data in an unmapped BAM file, producing a third BAM file that has alignment data and all the additional data from the unmapped BAM @PG ID:SplitBamByReadGroup PP:BamMerger VN:V1.19 CL:uk.ac.sanger.npg.picard.SplitBamByReadGroup INPUT=/nfs/sf38/ILorHSany_sf38/analysis/160418_HS21_19500_B_H3LKTADXY/Data/Intensities/BAM_basecalls_20160419-205116/no_cal/19500_2.bam OUTPUT_PREFIX=/nfs/sf38/ILorHSany_sf38/analysis/160418_HS21_19500_B_H3LKTADXY/Data/Intensities/BAM_basecalls_20160419-205116/no_cal/lane2/ VALIDATION_STRINGENCY=SILENT CREATE_MD5_FILE=true VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false PN:SplitBamByReadGroup DS:Split a BAM file into multiple BAM files based on ReadGroup. Headers are a copy of the original file, removing @RGs where IDs match with the other ReadGroup IDs @PG ID:bamcollate2 PP:SplitBamByReadGroup VN:2.0.37 CL:/software/solexa/pkg/biobambam/2.0.37/bin/bamcollate2 collate=1 level=0 PN:bamcollate2 @PG ID:bamreset PP:bamcollate2 VN:2.0.37 CL:/software/solexa/pkg/biobambam/2.0.37/bin/bamreset resetaux=0 level=0 verbose=0 PN:bamreset @PG ID:bamadapterclip PP:bamreset VN:2.0.37 CL:/software/solexa/pkg/biobambam/2.0.37/bin/bamadapterclip verbose=0 level=0 PN:bamadapterclip @PG ID:TopHat_0 PP:bamadapterclip VN:2.0.14 CL:/software/solexa/pkg/tophat2/2.0.14/bin/tophat --keep-fasta-order --no-sort-bam --output-dir tophat_out_19500_2#13 --mate-inner-dist 100 --num-threads=16 --library-type=fr-firststrand --no-coverage-search --microexon-search --transcriptome-index=/lustre/scratch110/srpipe/transcriptomes/Homo_sapiens/ensembl_78_transcriptome/GRCh38_15/tophat2/reference.known /lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/bowtie2/Homo_sapiens.GRCh38_15.fa ./intfile_1_19500_2#13.fq.gz ./intfile_2_19500_2#13.fq.gz @PG ID:TopHat_1 PP:TopHat_0 VN:2.0.14 CL:/software/solexa/pkg/tophat2/2.0.14/bin/tophat --keep-fasta-order --no-sort-bam --output-dir tophat_out_19500_2#13 --mate-inner-dist 100 --num-threads=16 --library-type=fr-firststrand --no-coverage-search --microexon-search --transcriptome-index=/lustre/scratch110/srpipe/transcriptomes/Homo_sapiens/ensembl_78_transcriptome/GRCh38_15/tophat2/reference.known /lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/bowtie2/Homo_sapiens.GRCh38_15.fa ./intfile_1_19500_2#13.fq.gz ./intfile_2_19500_2#13.fq.gz @PG ID:bamcat PP:TopHat_1 VN:2.0.37 CL:/software/solexa/pkg/biobambam/2.0.37/bin/bamcat I=tophat_out_19500_2#13/accepted_hits.bam I=tophat_out_19500_2#13/unmapped.bam level=0 PN:bamcat @PG ID:samtools PP:bamcat VN:1.3-npg-Apr2016 CL:/software/solexa/pkg/samtools/1.3-npg-Apr2016/bin/samtools reheader /tmp/My7rsv2xFo/postalntgt_alterSQ_headerSQfix_out /tmp/AhCY837dbN/postalntgt_mbuffer_headerSQfix_out PN:samtools @PG ID:bam12split PP:samtools VN:2.0.37 CL:/software/solexa/pkg/biobambam/2.0.37/bin/bam12split verbose=0 level=0 PN:bam12split @PG ID:bamsormadup PP:bam12split VN:2.0.37 CL:/software/solexa/pkg/biobambam/2.0.37/bin/bamsormadup threads=16 SO=queryname level=0 PN:bamsormadup @PG ID:AlignmentFilter PP:bamsormadup VN:V1.19 CL:uk.ac.sanger.npg.picard.AlignmentFilter INPUT_ALIGNMENT=[./initial_phix_aln_19500_2#13.bam, /tmp/mq4FCewxgQ/postalntgt_bam12auxmerge_out] OUTPUT_ALIGNMENT=[/tmp/fZCKq0PWDz/alignment_filter:__PHIX_BAM_OUT___out, /dev/stdout] METRICS_FILE=19500_2#13.bam_alignment_filter_metrics.json VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=SILENT COMPRESSION_LEVEL=0 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false PN:AlignmentFilter DS:Give a list of SAM/BAM files with the same set of records and in the same order but aligned with different references, split reads into different files according to alignments. You have option to put unaligned reads into one of output files or a separate file @PG ID:bamsort PN:bamsort CL:/software/solexa/pkg/biobambam/2.0.37/bin/bamsort SO=coordinate level=0 verbose=0 fixmate=1 adddupmarksupport=1 tmpfile=/nfs/sf38/ILorHSany_sf38/analysis/160418_HS21_19500_B_H3LKTADXY/Data/Intensities/BAM_basecalls_20160419-205116/no_cal/archive/lane2/bsfopt_19500_2#13.tmp PP:AlignmentFilter VN:2.0.37 @PG ID:bamstreamingmarkduplicates PN:bamstreamingmarkduplicates CL:/software/solexa/pkg/biobambam/2.0.37/bin/bamstreamingmarkduplicates level=0 verbose=0 tmpfile=/nfs/sf38/ILorHSany_sf38/analysis/160418_HS21_19500_B_H3LKTADXY/Data/Intensities/BAM_basecalls_20160419-205116/no_cal/archive/lane2/bmdfopt_19500_2#13.tmp M=/nfs/sf38/ILorHSany_sf38/analysis/160418_HS21_19500_B_H3LKTADXY/Data/Intensities/BAM_basecalls_20160419-205116/no_cal/archive/lane2/19500_2#13.markdups_metrics.txt PP:bamsort VN:2.0.37 @PG ID:scramble PN:scramble PP:bamstreamingmarkduplicates VN:1.14.7 CL:/software/solexa/pkg/scramble/1.14.7/bin/scramble -t 7 -7 -I bam -O cram -r /lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa @SQ SN:chr1 LN:248956422 AS:GRCh38 M5:6aef897c3d6ff0c78aff06ac189178dd UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr2 LN:242193529 AS:GRCh38 M5:f98db672eb0993dcfdabafe2a882905c UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr3 LN:198295559 AS:GRCh38 M5:76635a41ea913a405ded820447d067b0 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr4 LN:190214555 AS:GRCh38 M5:3210fecf1eb92d5489da4346b3fddc6e UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr5 LN:181538259 AS:GRCh38 M5:a811b3dc9fe66af729dc0dddf7fa4f13 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr6 LN:170805979 AS:GRCh38 M5:5691468a67c7e7a7b5f2a3a683792c29 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr7 LN:159345973 AS:GRCh38 M5:cc044cc2256a1141212660fb07b6171e UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr8 LN:145138636 AS:GRCh38 M5:c67955b5f7815a9a1edfaa15893d3616 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr9 LN:138394717 AS:GRCh38 M5:6c198acf68b5af7b9d676dfdd531b5de UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr10 LN:133797422 AS:GRCh38 M5:c0eeee7acfdaf31b770a509bdaa6e51a UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr11 LN:135086622 AS:GRCh38 M5:1511375dc2dd1b633af8cf439ae90cec UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr12 LN:133275309 AS:GRCh38 M5:96e414eace405d8c27a6d35ba19df56f UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr13 LN:114364328 AS:GRCh38 M5:a5437debe2ef9c9ef8f3ea2874ae1d82 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr14 LN:107043718 AS:GRCh38 M5:e0f0eecc3bcab6178c62b6211565c807 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr15 LN:101991189 AS:GRCh38 M5:f036bd11158407596ca6bf3581454706 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr16 LN:90338345 AS:GRCh38 M5:db2d37c8b7d019caaf2dd64ba3a6f33a UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr17 LN:83257441 AS:GRCh38 M5:f9a0fb01553adb183568e3eb9d8626db UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr18 LN:80373285 AS:GRCh38 M5:11eeaa801f6b0e2e36a1138616b8ee9a UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr19 LN:58617616 AS:GRCh38 M5:85f9f4fc152c58cb7913c06d6b98573a UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr20 LN:64444167 AS:GRCh38 M5:b18e6c531b0bd70e949a7fc20859cb01 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr21 LN:46709983 AS:GRCh38 M5:974dc7aec0b755b19f031418fdedf293 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr22 LN:50818468 AS:GRCh38 M5:ac37ec46683600f808cdd41eac1d55cd UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrX LN:156040895 AS:GRCh38 M5:2b3a55ff7f58eb308420c8a9b11cac50 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrY LN:57227415 AS:GRCh38 M5:ce3e31103314a704255f3cd90369ecce UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrM LN:16569 AS:GRCh38 M5:c68f52674c9fb33aef52dcf399755519 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr1_KI270706v1_random LN:175055 AS:GRCh38 M5:62def1a794b3e18192863d187af956e6 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr1_KI270707v1_random LN:32032 AS:GRCh38 M5:78135804eb15220565483b7cdd02f3be UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr1_KI270708v1_random LN:127682 AS:GRCh38 M5:1e95e047b98ed92148dd84d6c037158c UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr1_KI270709v1_random LN:66860 AS:GRCh38 M5:4e2db2933ea96aee8dab54af60ecb37d UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr1_KI270710v1_random LN:40176 AS:GRCh38 M5:9949f776680c6214512ee738ac5da289 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr1_KI270711v1_random LN:42210 AS:GRCh38 M5:af383f98cf4492c1f1c4e750c26cbb40 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr1_KI270712v1_random LN:176043 AS:GRCh38 M5:c38a0fecae6a1838a405406f724d6838 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr1_KI270713v1_random LN:40745 AS:GRCh38 M5:cb78d48cc0adbc58822a1c6fe89e3569 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr1_KI270714v1_random LN:41717 AS:GRCh38 M5:42f7a452b8b769d051ad738ee9f00631 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr2_KI270715v1_random LN:161471 AS:GRCh38 M5:b65a8af1d7bbb7f3c77eea85423452bb UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr2_KI270716v1_random LN:153799 AS:GRCh38 M5:2828e63b8edc5e845bf48e75fbad2926 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr3_GL000221v1_random LN:155397 AS:GRCh38 M5:3238fb74ea87ae857f9c7508d315babb UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr4_GL000008v2_random LN:209709 AS:GRCh38 M5:a999388c587908f80406444cebe80ba3 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr5_GL000208v1_random LN:92689 AS:GRCh38 M5:aa81be49bf3fe63a79bdc6a6f279abf6 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr9_KI270717v1_random LN:40062 AS:GRCh38 M5:796773a1ee67c988b4de887addbed9e7 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr9_KI270718v1_random LN:38054 AS:GRCh38 M5:b0c463c8efa8d64442b48e936368dad5 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr9_KI270719v1_random LN:176845 AS:GRCh38 M5:cd5e932cfc4c74d05bb64e2126873a3a UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr9_KI270720v1_random LN:39050 AS:GRCh38 M5:8c2683400a4aeeb40abff96652b9b127 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr11_KI270721v1_random LN:100316 AS:GRCh38 M5:9654b5d3f36845bb9d19a6dbd15d2f22 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr14_GL000009v2_random LN:201709 AS:GRCh38 M5:862f555045546733591ff7ab15bcecbe UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr14_GL000225v1_random LN:211173 AS:GRCh38 M5:63945c3e6962f28ffd469719a747e73c UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr14_KI270722v1_random LN:194050 AS:GRCh38 M5:51f46c9093929e6edc3b4dfd50d803fc UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr14_GL000194v1_random LN:191469 AS:GRCh38 M5:6ac8f815bf8e845bb3031b73f812c012 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr14_KI270723v1_random LN:38115 AS:GRCh38 M5:74a4b480675592095fb0c577c515b5df UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr14_KI270724v1_random LN:39555 AS:GRCh38 M5:c3fcb15dddf45f91ef7d94e2623ce13b UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr14_KI270725v1_random LN:172810 AS:GRCh38 M5:edc6402e58396b90b8738a5e37bf773d UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr14_KI270726v1_random LN:43739 AS:GRCh38 M5:fbe54a3197e2b469ccb2f4b161cfbe86 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr15_KI270727v1_random LN:448248 AS:GRCh38 M5:84fe18a7bf03f3b7fc76cbac8eb583f1 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr16_KI270728v1_random LN:1872759 AS:GRCh38 M5:369ff74cf36683b3066a2ca929d9c40d UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr17_GL000205v2_random LN:185591 AS:GRCh38 M5:458e71cd53dd1df4083dc7983a6c82c4 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr17_KI270729v1_random LN:280839 AS:GRCh38 M5:2756f6ee4f5780acce31e995443508b6 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr17_KI270730v1_random LN:112551 AS:GRCh38 M5:48f98ede8e28a06d241ab2e946c15e07 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr22_KI270731v1_random LN:150754 AS:GRCh38 M5:8176d9a20401e8d9f01b7ca8b51d9c08 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr22_KI270732v1_random LN:41543 AS:GRCh38 M5:d837bab5e416450df6e1038ae6cd0817 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr22_KI270733v1_random LN:179772 AS:GRCh38 M5:f1fa05d48bb0c1f87237a28b66f0be0b UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr22_KI270734v1_random LN:165050 AS:GRCh38 M5:1d17410ae2569c758e6dd51616412d32 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr22_KI270735v1_random LN:42811 AS:GRCh38 M5:eb6b07b73dd9a47252098ed3d9fb78b8 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr22_KI270736v1_random LN:181920 AS:GRCh38 M5:2ff189f33cfa52f321accddf648c5616 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr22_KI270737v1_random LN:103838 AS:GRCh38 M5:2ea8bc113a8193d1d700b584b2c5f42a UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr22_KI270738v1_random LN:99375 AS:GRCh38 M5:854ec525c7b6a79e7268f515b6a9877c UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chr22_KI270739v1_random LN:73985 AS:GRCh38 M5:760fbd73515fedcc9f37737c4a722d6a UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrY_KI270740v1_random LN:37240 AS:GRCh38 M5:69e42252aead509bf56f1ea6fda91405 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270302v1 LN:2274 AS:GRCh38 M5:ee6dff38036f7d03478c70717643196e UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270304v1 LN:2165 AS:GRCh38 M5:9423c1b46a48aa6331a77ab5c702ac9d UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270303v1 LN:1942 AS:GRCh38 M5:2cb746c78e0faa11e628603a4bc9bd58 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270305v1 LN:1472 AS:GRCh38 M5:f9acea3395b6992cf3418b6689b98cf9 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270322v1 LN:21476 AS:GRCh38 M5:7d459255d1c54369e3b64e719061a5a5 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270320v1 LN:4416 AS:GRCh38 M5:d898b9c5a0118e76481bf5695272959e UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270310v1 LN:1201 AS:GRCh38 M5:af6cb123af7007793bac06485a2a20e9 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270316v1 LN:1444 AS:GRCh38 M5:6adde7a9fe7bd6918f12d0f0924aa8ba UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270315v1 LN:2276 AS:GRCh38 M5:ecc43e822dc011fae1fcfd9981c46e9c UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270312v1 LN:998 AS:GRCh38 M5:26499f2fe4c65621fd8f4ecafbad31d7 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270311v1 LN:12399 AS:GRCh38 M5:59594f9012d8ce21ed5d1119c051a2ba UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270317v1 LN:37690 AS:GRCh38 M5:cd4b1fda800f6ec9ea8001994dbf6499 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270412v1 LN:1179 AS:GRCh38 M5:7bb9612f733fb7f098be79499d46350c UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270411v1 LN:2646 AS:GRCh38 M5:fc240322d91d43c04f349cc58fda3eca UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270414v1 LN:2489 AS:GRCh38 M5:753e02ef3b1c590e0e3376ad2ebb5836 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270419v1 LN:1029 AS:GRCh38 M5:58455e7a788f0dc82034d1fb109f6f5c UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270418v1 LN:2145 AS:GRCh38 M5:1537ec12b9c58d137a2d4cb9db896bbc UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270420v1 LN:2321 AS:GRCh38 M5:bac954a897539c91982a7e3985a49910 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270424v1 LN:2140 AS:GRCh38 M5:747c8f94f34d5de4ad289bc604708210 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270417v1 LN:2043 AS:GRCh38 M5:cd26758fda713f9c96e51d541f50c2d0 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270422v1 LN:1445 AS:GRCh38 M5:3fce80eb4c0554376b591699031feb56 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270423v1 LN:981 AS:GRCh38 M5:bdf5a85c001731dccfb150db2bfe58ac UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270425v1 LN:1884 AS:GRCh38 M5:665a46879bbb48294b0cfa87b61e71f6 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270429v1 LN:1361 AS:GRCh38 M5:ee8962dbef9396884f649e566b78bf06 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270442v1 LN:392061 AS:GRCh38 M5:796289c4cda40e358991f9e672490015 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270466v1 LN:1233 AS:GRCh38 M5:530b7033716a5d72dd544213c513fd12 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270465v1 LN:1774 AS:GRCh38 M5:bb1b2323414425c46531b3c3d22ae00d UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270467v1 LN:3920 AS:GRCh38 M5:db34e0dc109a4afd499b5ec6aaae9754 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270435v1 LN:92983 AS:GRCh38 M5:1655c75415b9c29e143a815f44286d05 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270438v1 LN:112505 AS:GRCh38 M5:e765271939b854dd6826aa764e930c87 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270468v1 LN:4055 AS:GRCh38 M5:0a603090f06108ed7aff75df0767b822 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270510v1 LN:2415 AS:GRCh38 M5:cd7348b3b5d9d0dfef6aed2af75ce920 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270509v1 LN:2318 AS:GRCh38 M5:1cdeb8c823d839e1d1735b5bc9a14856 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270518v1 LN:2186 AS:GRCh38 M5:3fd898b62ca859f50fb8b83e7706352b UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270508v1 LN:1951 AS:GRCh38 M5:7d42a358d472b9cbdfdf30c8742473d0 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270516v1 LN:1300 AS:GRCh38 M5:1cbaaafbbf016906a5bf5886f5a0ecb7 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270512v1 LN:22689 AS:GRCh38 M5:ba1021c82d1230af856f59079e2f71b4 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270519v1 LN:138126 AS:GRCh38 M5:8d754e9c9afd904fba0a2cd577fcc9a1 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270522v1 LN:5674 AS:GRCh38 M5:070b4678e22501029c2e3297115216bc UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270511v1 LN:8127 AS:GRCh38 M5:907ca34a4a2a6673632ebaf513a4c1a4 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270515v1 LN:6361 AS:GRCh38 M5:dd7527ee8e0bdb0a43ca0b2a5456c8c3 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270507v1 LN:5353 AS:GRCh38 M5:311894d0a815eb07c5cac49da851cb4a UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270517v1 LN:3253 AS:GRCh38 M5:913440c38d95c618617ca69bb9296170 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270529v1 LN:1899 AS:GRCh38 M5:4caf890f2586daab8e4b2e2db904f05f UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270528v1 LN:2983 AS:GRCh38 M5:d75c9235f0b8c449fc4352997c56b086 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270530v1 LN:2168 AS:GRCh38 M5:04549369e1197c626669a10164613635 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270539v1 LN:993 AS:GRCh38 M5:19e3a982e67eafef39c5a3e4163f1e17 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270538v1 LN:91309 AS:GRCh38 M5:d60b72221cc7af871f2c757577e4c92a UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270544v1 LN:1202 AS:GRCh38 M5:e62a14b14467cdf48b5a236c66918f0f UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270548v1 LN:1599 AS:GRCh38 M5:866b0db8e9cf66208c2c064bd09ce0a2 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270583v1 LN:1400 AS:GRCh38 M5:b127e2e6dbe358ff192b271b8c6ee690 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270587v1 LN:2969 AS:GRCh38 M5:36be47659719f47b95caa51744aa8f70 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270580v1 LN:1553 AS:GRCh38 M5:1df30dae0f605811d927dcea58e729fc UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270581v1 LN:7046 AS:GRCh38 M5:9f26945f9f9b3f865c9ebe953cbbc1a9 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270579v1 LN:31033 AS:GRCh38 M5:fe62fb1964002717cc1b034630e89b1f UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270589v1 LN:44474 AS:GRCh38 M5:211c215414693fe0a2399cf82e707e03 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270590v1 LN:4685 AS:GRCh38 M5:e8a57f147561b361091791b9010cd28b UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270584v1 LN:4513 AS:GRCh38 M5:d93636c9d54abd013cfc0d4c01334032 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270582v1 LN:6504 AS:GRCh38 M5:6fd9804a7478d2e28160fe9f017689cb UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270588v1 LN:6158 AS:GRCh38 M5:37ffa850e69b342a8f8979bd3ffc77d4 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270593v1 LN:3041 AS:GRCh38 M5:f4a5bfa203e9e81acb640b18fb11e78e UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270591v1 LN:5796 AS:GRCh38 M5:d6af509d69835c9ac25a30086e5a4051 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270330v1 LN:1652 AS:GRCh38 M5:c2c590706a339007b00c59e0b8937e78 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270329v1 LN:1040 AS:GRCh38 M5:f023f927ae84c5cc48dc4dce11ba90f2 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270334v1 LN:1368 AS:GRCh38 M5:53afe12d1371f250a3d1de655345d374 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270333v1 LN:2699 AS:GRCh38 M5:57baf650c47bba9b3a8b7c6d0fb55ad6 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270335v1 LN:1048 AS:GRCh38 M5:eb27188639503b524d2659a23b8262ea UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270338v1 LN:1428 AS:GRCh38 M5:301ef75a6b2996d745eb3464bd352b57 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270340v1 LN:1428 AS:GRCh38 M5:56b462bac20d385cdfcde0155fe4c3a1 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270336v1 LN:1026 AS:GRCh38 M5:69ad2d85d870c8b0269434581e86e30e UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270337v1 LN:1121 AS:GRCh38 M5:16fc8d71a2662a6cfec7bdeec3d810c6 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270363v1 LN:1803 AS:GRCh38 M5:6edd17a912f391022edbc192d49f2489 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270364v1 LN:2855 AS:GRCh38 M5:6ff66a8e589ca27d93b5bac0e5b13a87 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270362v1 LN:3530 AS:GRCh38 M5:bc82401ffd9a5ae711fa0ea34da8d2f0 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270366v1 LN:8320 AS:GRCh38 M5:44a0b65b7ba6bcff37eca202e7d966ea UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270378v1 LN:1048 AS:GRCh38 M5:fc13bda7dbd914c92fb7e49489d1350f UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270379v1 LN:1045 AS:GRCh38 M5:3218bef25946cd95de585dfc7750f63b UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270389v1 LN:1298 AS:GRCh38 M5:2c9b08c57c27e714d4d5259fd91b6983 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270390v1 LN:2387 AS:GRCh38 M5:7a64d89ea14990c16d20f4d6e7283e10 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270387v1 LN:1537 AS:GRCh38 M5:22a12462264340c25e912b8485cdfa91 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270395v1 LN:1143 AS:GRCh38 M5:7c03ca4756c1620f318fb189214388d8 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270396v1 LN:1880 AS:GRCh38 M5:9069bed3c2efe7cc87227d619ad5816f UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270388v1 LN:1216 AS:GRCh38 M5:76f9f3315fa4b831e93c36cd88196480 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270394v1 LN:970 AS:GRCh38 M5:d5171e863a3d8f832f0559235987b1e5 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270386v1 LN:1788 AS:GRCh38 M5:b9b1baaa7abf206f6b70cf31654172db UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270391v1 LN:1484 AS:GRCh38 M5:1fa5cf03b3eac0f1b4a64948fd09de53 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270383v1 LN:1750 AS:GRCh38 M5:694d75683e4a9554bcc1291edbcaee43 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270393v1 LN:1308 AS:GRCh38 M5:3724e1d70677d6b5c4bcf17fd40da111 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270384v1 LN:1658 AS:GRCh38 M5:b06e44ea15d0a57618d6ca7d2e6ac5d2 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270392v1 LN:971 AS:GRCh38 M5:59b3ca8de65fb171683f8a06d3b4bf0d UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270381v1 LN:1930 AS:GRCh38 M5:2a9297cfd3b3807195ab9ad07e775d99 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270385v1 LN:990 AS:GRCh38 M5:112a8b1df94ef0498a0bfe2d2ea5cc23 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270382v1 LN:4215 AS:GRCh38 M5:e7085cdcee6ad62f359744e13d3209fc UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270376v1 LN:1136 AS:GRCh38 M5:59e8fc80b78d62325082334b43dffdba UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270374v1 LN:2656 AS:GRCh38 M5:dbc92c9a92e558946e58b4909ec95dd5 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270372v1 LN:1650 AS:GRCh38 M5:53a9d5e8fd28bce5da5efcfd9114dbf2 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270373v1 LN:1451 AS:GRCh38 M5:b174fe53be245a840cd6324e39b88ced UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270375v1 LN:2378 AS:GRCh38 M5:d678250c97e9b94aa390fa46e70a6d83 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270371v1 LN:2805 AS:GRCh38 M5:a0af3d778dfeb7963e8e6d84c0c54fba UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270448v1 LN:7992 AS:GRCh38 M5:0f40827c265cb813b6e723da6c9b926b UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270521v1 LN:7642 AS:GRCh38 M5:af5bef7cefec7bd7efa729ac6c5be088 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_GL000195v1 LN:182896 AS:GRCh38 M5:5d9ec007868d517e73543b005ba48535 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_GL000219v1 LN:179198 AS:GRCh38 M5:f977edd13bac459cb2ed4a5457dba1b3 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_GL000220v1 LN:161802 AS:GRCh38 M5:fc35de963c57bf7648429e6454f1c9db UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_GL000224v1 LN:179693 AS:GRCh38 M5:d5b2fc04f6b41b212a4198a07f450e20 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270741v1 LN:157432 AS:GRCh38 M5:86eaea8a15a3950e37442eaaa5c9dc92 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_GL000226v1 LN:15008 AS:GRCh38 M5:1c1b2cd1fccbc0a99b6a447fa24d1504 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_GL000213v1 LN:164239 AS:GRCh38 M5:9d424fdcc98866650b58f004080a992a UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270743v1 LN:210658 AS:GRCh38 M5:3b62d9d3100f530d509e4efebd98502c UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270744v1 LN:168472 AS:GRCh38 M5:e90aee46b947ff8c32291a6843fde3f9 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270745v1 LN:41891 AS:GRCh38 M5:1386fe3de6f82956f2124e19353ff9c1 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270746v1 LN:66486 AS:GRCh38 M5:c470486a0a858e14aa21d7866f83cc17 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270747v1 LN:198735 AS:GRCh38 M5:62375d812ece679c9fd2f3d08d4e22a4 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270748v1 LN:93321 AS:GRCh38 M5:4f6c6ab005c852a4352aa33e7cc88ded UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270749v1 LN:158759 AS:GRCh38 M5:c899a7b4e911d371283f3f4058ca08b7 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270750v1 LN:148850 AS:GRCh38 M5:c022ba92f244b7dc54ea90c4eef4d554 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270751v1 LN:150742 AS:GRCh38 M5:1b758bbdee0e9ca882058d916cba9d29 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270752v1 LN:27745 AS:GRCh38 M5:e0880631848337bd58559d9b1519da63 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270753v1 LN:62944 AS:GRCh38 M5:25075fb2a1ecada67c0eb2f1fe0c7ec9 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270754v1 LN:40191 AS:GRCh38 M5:fe9e16233cecbc244f06f3acff3d03b8 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270755v1 LN:36723 AS:GRCh38 M5:4a7da6a658955bd787af8add3ccb5751 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270756v1 LN:79590 AS:GRCh38 M5:2996b120a5a5e15dab6555f0bf92e374 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270757v1 LN:71251 AS:GRCh38 M5:174c73b60b41d8a1ef0fbaa4b3bdf0d3 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_GL000214v1 LN:137718 AS:GRCh38 M5:46c2032c37f2ed899eb41c0473319a69 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_KI270742v1 LN:186739 AS:GRCh38 M5:2f31c013a4a8301deb8ab7ed1ca1cd99 UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_GL000216v2 LN:176608 AS:GRCh38 M5:725009a7e3f5b78752b68afa922c090c UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrUn_GL000218v1 LN:161147 AS:GRCh38 M5:1d708b54644c26c7e01c2dad5426d38c UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human @SQ SN:chrEBV LN:171823 AS:GRCh38 M5:6743bd63b3ff2b5b8985d8933c53290a UR:/lustre/scratch110/srpipe/references/Homo_sapiens/GRCh38_15/all/fasta/Homo_sapiens.GRCh38_15.fa SP:Human