FastQCFastQC Report
Sun 11 Sep 2022
EGAF00002332255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002332255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1978068
Sequences flagged as poor quality0
Sequence length35-165
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCAGGCCCAGCTCTTCCTCCCGGCTGCGTCTCCAGGCCCGACTGCTGC32090.1622290032496355No Hit
GCCCAGTTCCTCCCTCACGGTGGCCTGTTGAGGCAGGGGCTCACGCTGAC24950.1261331764125399No Hit
CTGCAGGCCCAGCTGTTCCTCCTGGCTGCATCTCTCGGCCCAGCTCCTGC23020.1163761812030729No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)