FastQCFastQC Report
Wed 1 May 2024
EGAF00002332426

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002332426
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18784234
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length35-165
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN701860.3736431307233502No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN511590.27235073839050344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)