FastQCFastQC Report
Wed 1 May 2024
EGAF00002332438

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002332438
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15056650
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length35-165
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN563810.37445912603401155No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN202930.1347776563843883No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)