FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002332921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002332921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5171297
Sequences flagged as poor quality0
Sequence length35-165
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN103040.19925368819466374No Hit
GCCCAGTTCCTCCCTCACGGTGGCCTGTTGAGGCAGGGGCTCACGCTGAC80560.15578296895343663No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)