FastQCFastQC Report
Sun 5 May 2024
EGAF00002333702

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002333702
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13444764
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length35-165
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN461340.34313729865395926No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN163080.12129629051130983No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)