FastQCFastQC Report
Sun 5 May 2024
EGAF00002334528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002334528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23409619
Total Bases3.2 Gbp
Sequences flagged as poor quality0
Sequence length35-165
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN385470.1646630814452811No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN245930.10505510576656545No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)