FastQCFastQC Report
Tue 27 Sep 2022
EGAF00002372419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002372419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences164828918
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCCCGT4491055627.246769890220357No Hit
GTGGTACC4311954926.160184464718743No Hit
TACTATAG4306933626.12972075688806No Hit
ACAAGGTA3052227218.517546781445233No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)