FastQCFastQC Report
Sun 2 Apr 2023
EGAF00002372422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002372422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences156551373
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGATAC5258815033.59162490385824No Hit
ACGCGGGT3495270022.326664615071756No Hit
GAATTCCA3313799121.167486662668875Illumina Small RNA Adapter 2 (100% over 8bp)
TTTACATG3292954521.034338038031773No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)