FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002372453

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002372453
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences134384262
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCTTCG4272731331.794878629463323No Hit
GTATGCTC3462446525.765267810898866No Hit
CGTGCAGA3165007023.55191711362749No Hit
AACAAGAT2437154318.135712201180223No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)