FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002372715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002372715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16876621
Sequences flagged as poor quality0
Sequence length150
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT704540.41746508379846886No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT379610.2249324672278888No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCTAAGGATCTCGTATGC357800.21200926417675672TruSeq Adapter, Index 2 (97% over 36bp)
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT320930.19016247387436147No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT258840.15337193387230774No Hit
TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT186170.11031236643875572No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)