FastQCFastQC Report
Wed 15 Mar 2023
EGAF00002373067

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002373067
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26975327
Sequences flagged as poor quality0
Sequence length150
%GC30

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT715890.2653869589792183No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAAGTTATCTCGTATGC468780.17378102589822175TruSeq Adapter, Index 2 (97% over 36bp)
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT376960.13974251359399648No Hit
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT348070.12903272683219003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)