FastQCFastQC Report
Wed 15 Mar 2023
EGAF00002373084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002373084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28101072
Sequences flagged as poor quality0
Sequence length150
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGAT5520531.9645264778510942Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AAGCAGTGGTATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAG1745800.6212574381504022Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AAGCAGTGGTATCAACGCAGAGTACATGGGAATAACGCCGCCGCATCGCC1445840.5145141793878896Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG432280.1538304303835811Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CAACCACAATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT290660.10343377647657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)