FastQCFastQC Report
Wed 15 Mar 2023
EGAF00002373128

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002373128
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23372035
Sequences flagged as poor quality0
Sequence length150
%GC32

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1351310.5781738731779239No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG481340.2059469789429975Illumina Single End PCR Primer 1 (100% over 50bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA370270.15842437340180263No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA319380.1366504885004665No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)