FastQCFastQC Report
Thu 9 May 2024
EGAF00002373143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002373143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23438628
Total Bases3.5 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC31

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT510920.2179820422936018No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGAGAAATCTCGTATGC338340.14435145265328672TruSeq Adapter, Index 2 (97% over 36bp)
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT283390.12090724764265211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)