FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002373147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002373147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12274669
Sequences flagged as poor quality0
Sequence length150
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT523050.42612147015939894No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT311330.253636167297057No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTATGCAATCTCGTATGC273790.2230528578815445TruSeq Adapter, Index 9 (97% over 36bp)
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT246290.20064899509713868No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT187930.15310392483903232No Hit
TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT135690.11054473240785555No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)