FastQCFastQC Report
Wed 15 Mar 2023
EGAF00002373155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002373155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29811124
Sequences flagged as poor quality0
Sequence length150
%GC32

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1068950.35857420203277135No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT562600.18872149872644856No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAAGACATCTCGTATGC555870.18646395218107176TruSeq Adapter, Index 3 (97% over 37bp)
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT488420.16383816993951655No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT337610.11324967149846481No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)