FastQCFastQC Report
Wed 15 Mar 2023
EGAF00002373223

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002373223
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15535026
Sequences flagged as poor quality0
Sequence length150
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT777930.5007587370629442No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT416490.2680973948804463No Hit
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT346180.2228383782556914No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT245070.15775319590710693No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCCAATCTCGTATGC182140.11724473457591895TruSeq Adapter, Index 13 (97% over 39bp)
TATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT167340.10771787572161128No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)