FastQCFastQC Report
Wed 14 Sep 2022
EGAF00002373232

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002373232
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16592957
Sequences flagged as poor quality0
Sequence length150
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA878970.5297247500852319No Hit
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCCG269360.16233393481342717Illumina Single End PCR Primer 1 (100% over 50bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA247970.14944292328365583No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA224140.13508140833487364No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)