FastQCFastQC Report
Sun 2 Apr 2023
EGAF00002388564

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002388564
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences240018897
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATTCGG6283830026.180563607872926No Hit
TGCGAACT5881556024.504553906020156No Hit
ATTACTTC4291656917.880495884455296No Hit
CAGCGGAA4127370717.196023944731316No Hit
TCATTCGG38302841.5958260153157857No Hit
TAGCGGAA35124011.4633851933750033No Hit
GGCGAACT28062001.1691579434264294No Hit
NCATTCGG26399211.0998804814939218No Hit
NGCGAACT24824851.0342873128027084No Hit
NAGCGGAA21306670.8877080207563823No Hit
GAGCGGAA16687730.695267339721172No Hit
NTTACTTC15624760.6509804100966267No Hit
GCATTAGG15084820.6284846813540685No Hit
TGCGAAAT12583950.524289968718588No Hit
ATTAATTC12421780.5175334173792158No Hit
ATTATTTC9708910.4045060668702265No Hit
TGAGAACT8896320.37065081588138454No Hit
GAATTCGG8417670.35070863607876673No Hit
ATTACTTA8056390.33565648791394953No Hit
AAGCGGAA7761540.32337203849411905No Hit
ACATTCGG6250390.2604124124443418No Hit
GCATTTGG5360920.2233540803247671No Hit
AGCGAACT4664360.19433303203622337No Hit
TGTGAACT2537420.10571750940093687No Hit
CAGTGGAA2415710.10064665866704654No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)