FastQCFastQC Report
Tue 26 Sep 2023
EGAF00002388645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002388645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32882394
Sequences flagged as poor quality0
Sequence length101
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGGCTAGGCGGGTGTCCCCTTCCTCCCTCACCGCTCCATGTGCGTCC1001770.3046523924018428No Hit
GGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATC652670.1984861564519907No Hit
GGCCGTGGCTCTCTTGGCAGCCTTCCTGATTTCTGCAGCTCTGTGTGAAG391810.1191549496061631No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG369210.11228197071052673No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)