FastQCFastQC Report
Sun 5 May 2024
EGAF00002389025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002389025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17453554
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length125
%GC26

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN880180.5042984368685025No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA190200.10897494000362334No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)