FastQCFastQC Report
Wed 16 Nov 2022
EGAF00002395171

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002395171
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56879418
Sequences flagged as poor quality0
Sequence length51
%GC57

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAA1161120.20413710984173572No Hit
CTTGTAGTTGTTCTCCGGCTGCCCATTGCTCTCCCACTCCACGGCGATGTC886810.15591052637001315No Hit
CACAGGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAGAACCAGG832860.14642554886901268No Hit
CGGAGAACAACTACAAGACCACGCCTCCCGTGCTGGACTCCGACGGCTCCT811620.1426913334450785No Hit
CGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGATGAGCTGACCAAG733380.12893591843714014No Hit
CTGGGATAGAAGTTATTCAGCAGGCACACAACAGAGGCAGTTCCAGATTTC696960.12253289933451851No Hit
CCGAGAACCACAGGTGTACACCCTGCCCCCATCCCGGGAGGAGATGACCAA686270.12065348488622019No Hit
CTCCGGCTGCCCATTGCTCTCCCACTCCACGGCGATGTCGCTGGGATAGAA656230.11537213689493096No Hit
GTCTTGTAGTTGTTCTCCGGCTGCCCATTGCTCTCCCACTCCACGGCGATG577900.101600898940281No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)