FastQCFastQC Report
Wed 15 Mar 2023
EGAF00002396216

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002396216
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60433373
Sequences flagged as poor quality0
Sequence length150-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA1266900.20963582489430138No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA1226970.2030285484809858No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG892220.14763696873249157No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG858960.1421333871270101No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG782670.1295095675033727No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)