FastQCFastQC Report
Sun 2 Apr 2023
EGAF00002399492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002399492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24152228
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCGCTCATCTCGTAT3972601.6448171986451932TruSeq Adapter, Index 10 (97% over 37bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCGCTCATCTCGTA451510.18694341573787726TruSeq Adapter, Index 10 (97% over 37bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT259420.10741038052472841No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)