FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002423154

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002423154
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8399124
Sequences flagged as poor quality0
Sequence length150
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATGAATCATCTCGTAT3719764.428747569389379TruSeq Adapter, Index 9 (97% over 38bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)