FastQCFastQC Report
Sat 11 May 2024
EGAF00002423312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002423312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18280650
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAATCTCGTAT3569111.952397753909188TruSeq Adapter, Index 13 (97% over 40bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACAGTCAACAATCTCGTA2505971.370831999956238TruSeq Adapter, Index 13 (97% over 40bp)
CCCAAACCCACTCCACCTTACTACCAGACAACCTTAGCCAAACCATTTAC198610.1086449333037939No Hit
GTGGAAGTGAGCTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTG197960.10828936607833967No Hit
CTCAAATCATGAAAATTATTAATATTACTGCTGTTAGAGAAATGAATGAG192820.1054776498647477No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)