FastQCFastQC Report
Wed 8 May 2024
EGAF00002424139

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002424139
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2739047
Total Bases345.1 Mbp
Sequences flagged as poor quality0
Sequence length126
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC31320.1143463401686791No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA30510.11138910723328223No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)