FastQCFastQC Report
Sun 2 Apr 2023
EGAF00002431464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002431464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39450406
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCG1229020.31153545035759583No Hit
CTGGGCTCTTCCCTGTTCACTCGCCGTTACTGAGGGAATCCTGGTTAGTT733290.18587641404755126No Hit
GTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGTCTTGC530960.13458923591306005No Hit
CTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGT455500.11546142262769109No Hit
CCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCGGCGCTG437340.11085817469153549No Hit
CTGGGTGCCAGGGCAGTGATCTCCTTCTGCATCCTGTCGGCAATGCCAGG417120.10573275215469266No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)