FastQCFastQC Report
Thu 16 May 2024
EGAF00002431703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002431703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92949282
Total Bases7 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4674260.502882851747042No Hit
AGTATGGCCCGGGGGATCCTTATCTGTCAAAACCGCTAATGTCCGTTCTA997470.10731336257121384No Hit
GTACTGGATGCATCTGCAGGATATCGCGGCCGCCATCTGCCCTACGTTTG959880.10326922159549334No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)