FastQCFastQC Report
Mon 23 Jan 2023
EGAF00002431821

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002431821
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences155779582
Sequences flagged as poor quality0
Sequence length100-101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC4215860.2706298184828869Illumina Single End PCR Primer 1 (100% over 50bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1617150.10381013860982116No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)