FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002439816

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002439816
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6504817
Sequences flagged as poor quality0
Sequence length125
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGATTAGCACTACGCATCGGTTACAAACGAGGACCTGATGCACTTTGAC109290.16801395027715613No Hit
CGTCGAACTTACATCCGATCATGCTGTCAAAGTGCATCAGGTCCTCGTTT103840.15963554393613225No Hit
ATCGCGGATTAGCACTACGCATCGGTTACAAACGAGGACCTGATGCACTT101440.15594597050155293No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)