FastQCFastQC Report
Sat 1 Apr 2023
EGAF00002439830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002439830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15109859
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGATTAGCACTACGCATCGGTTACAAACGAGGACCTGATGCACTTTGAC211290.1398358515456696No Hit
CGTCGAACTTACATCCGATCATGCTGTCAAAGTGCATCAGGTCCTCGTTT208410.13792981125766957No Hit
ATCGCGGATTAGCACTACGCATCGGTTACAAACGAGGACCTGATGCACTT177970.11778402432478026No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)