FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002439850

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002439850
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16098808
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGAACTTACATCCGATCATGCTGTCAAAGTGCATCAGGTCCTCGTTT329960.20495927400339206No Hit
CGGATTAGCACTACGCATCGGTTACAAACGAGGACCTGATGCACTTTGAC280920.17449739135965844No Hit
ATCGCGGATTAGCACTACGCATCGGTTACAAACGAGGACCTGATGCACTT203660.12650626058774042No Hit
GATTAGCACTACGCATCGGTTACAAACGAGGACCTGATGCACTTTGACAG170770.1060761765715822No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)