FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002442658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002442658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18026534
Sequences flagged as poor quality0
Sequence length42-76
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT222570.12346799445750359No Hit
ACTTAGAAGAGTAGCATGAGGAAGGAAAAGATAAAAGGTTTCTAAAACAT193830.10752482978702395No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)