FastQCFastQC Report
Sat 4 Jun 2022
EGAF00002443530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002443530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences357801
Sequences flagged as poor quality0
Sequence length9-83684
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGTTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT45781.279482170256651No Hit
TTGGTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT20510.5732236634330256No Hit
TTGTTGTACTTCGTTCAGTTACGTATTGCTTTTCTGTTGGTGCTGATATT13220.3694791238705314No Hit
TTGTTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT11510.32168719483735375No Hit
TTGTTGTGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT8620.2409160399216324No Hit
TTGTTATTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATC8520.23812119027056938No Hit
TTGTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTT7820.21855724271312824No Hit
TTGGTATGCTTCGTTCAGTTACGTATTGCTTTTCTGTTGGTGCTGATATT6160.1721627385054821No Hit
CTGTTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT5660.15818849025016699No Hit
TTGGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTTC5450.15231930598293464No Hit
TTATTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT5030.14058093744846997No Hit
TTGATGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT5030.14058093744846997No Hit
TTGGTATTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATC4800.134152783251025No Hit
TTGTTGTACTTCGTTCGGTTACGTATTGCTACTTGCCTGTCGCTCTATCT4710.1316374185650683No Hit
TGGTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTT4010.11207347100762714No Hit
TTGTTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTTC3920.10955810632167041No Hit
TTGGTATACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT3840.10732222660082No Hit
TTGTTATTGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATC3730.10424789198465068No Hit
TTGGTAATACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATC3690.10312995212422547No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)