FastQCFastQC Report
Fri 24 Mar 2023
EGAF00002443566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002443566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences609485
Sequences flagged as poor quality0
Sequence length23-68123
%GC40

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGTTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT68171.1184852785548456No Hit
TTGGTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT31920.5237208462882598No Hit
TTGTTGTACTTCGTTCAGTTACGTATTGCTTTTCTGTTGGTGCTGATATT19090.31321525550259643No Hit
TTGTTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT17400.2854869274879612No Hit
TTGTTGTGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT11650.19114498305946825No Hit
TTGTTATTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATC11030.18097246035587422No Hit
TTGTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTT10500.17227659417376964No Hit
TTGGTATGCTTCGTTCAGTTACGTATTGCTTTTCTGTTGGTGCTGATATT9560.15685373717154646No Hit
CTGTTGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT8680.14241531785031625No Hit
TTGGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTTC8080.13257094104038655No Hit
TTGGTATTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATC7720.12666431495442873No Hit
TTGATGTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT6760.11091331205854123No Hit
TTGTTACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTTC6470.10615519660040855No Hit
TGGTATGCTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCTT6280.10303781061059747No Hit
TTGGTATACTTCGTTCAGTTACGTATTGCTACTTGCCTGTCGCTCTATCT6210.10188929998277234No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)